ThaumatinV1, Main, Exploration, bibRecord, 000137

MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.

Identifieur interne : 000137 ( Main/Exploration ); précédent : 000136; suivant : 000138

MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.

Auteurs : Ulrich Zander [France] ; Gleb Bourenkov [Allemagne] ; Alexander N. Popov [France] ; Daniele De Sanctis [France] ; Olof Svensson [France] ; Andrew A. Mccarthy [France] ; Ekaterina Round [France] ; Valentin Gordeliy [France] ; Christoph Mueller-Dieckmann [France] ; Gordon A. Leonard [France]

Source :

Acta crystallographica. Section D, Biological crystallography [ 1399-0047 ] ; 2015.

RBID : pubmed:26527148

Descripteurs français

English descriptors

KwdEn :
- Animals (MeSH), Bacillus (chemistry), Bacteriorhodopsins (chemistry), Bombyx (chemistry), Cluster Analysis (MeSH), Crystallization (methods), Crystallography, X-Ray (methods), Halobacterium salinarum (chemistry), Insect Proteins (chemistry), Models, Molecular (MeSH), Muramidase (chemistry), Plant Proteins (chemistry), Plants (chemistry), Proteins (chemistry), Synchrotrons (MeSH), Thermolysin (chemistry), Workflow (MeSH).
MESH :
- chemical , chemistry : Bacteriorhodopsins, Insect Proteins, Muramidase, Plant Proteins, Proteins, Thermolysin.
- chemistry : Bacillus, Bombyx, Halobacterium salinarum, Plants.
- methods : Crystallization, Crystallography, X-Ray.
- Animals, Cluster Analysis, Models, Molecular, Synchrotrons, Workflow.

Abstract

Here, an automated procedure is described to identify the positions of many cryocooled crystals mounted on the same sample holder, to rapidly predict and rank their relative diffraction strengths and to collect partial X-ray diffraction data sets from as many of the crystals as desired. Subsequent hierarchical cluster analysis then allows the best combination of partial data sets, optimizing the quality of the final data set obtained. The results of applying the method developed to various systems and scenarios including the compilation of a complete data set from tiny crystals of the membrane protein bacteriorhodopsin and the collection of data sets for successful structure determination using the single-wavelength anomalous dispersion technique are also presented.

DOI: 10.1107/S1399004715017927
PubMed: 26527148
PubMed Central: PMC4631482

Affiliations:

Links toward previous steps (curation, corpus...)

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to stream Main, to step Curation: 000125

Le document en format XML

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<term>Bacillus (chemistry)</term>
<term>Bacteriorhodopsins (chemistry)</term>
<term>Bombyx (chemistry)</term>
<term>Cluster Analysis (MeSH)</term>
<term>Crystallization (methods)</term>
<term>Crystallography, X-Ray (methods)</term>
<term>Halobacterium salinarum (chemistry)</term>
<term>Insect Proteins (chemistry)</term>
<term>Models, Molecular (MeSH)</term>
<term>Muramidase (chemistry)</term>
<term>Plant Proteins (chemistry)</term>
<term>Plants (chemistry)</term>
<term>Proteins (chemistry)</term>
<term>Synchrotrons (MeSH)</term>
<term>Thermolysin (chemistry)</term>
<term>Workflow (MeSH)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de regroupements (MeSH)</term>
<term>Animaux (MeSH)</term>
<term>Bacillus (composition chimique)</term>
<term>Bacillus thermoproteolyticus neutral proteinase (composition chimique)</term>
<term>Bactériorhodopsines (composition chimique)</term>
<term>Bombyx (composition chimique)</term>
<term>Cristallisation (méthodes)</term>
<term>Cristallographie aux rayons X (méthodes)</term>
<term>Flux de travaux (MeSH)</term>
<term>Halobacterium salinarum (composition chimique)</term>
<term>Lysozyme (composition chimique)</term>
<term>Modèles moléculaires (MeSH)</term>
<term>Plantes (composition chimique)</term>
<term>Protéines (composition chimique)</term>
<term>Protéines d'insecte (composition chimique)</term>
<term>Protéines végétales (composition chimique)</term>
<term>Synchrotrons (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Bacteriorhodopsins</term>
<term>Insect Proteins</term>
<term>Muramidase</term>
<term>Plant Proteins</term>
<term>Proteins</term>
<term>Thermolysin</term>
</keywords>
<keywords scheme="MESH" qualifier="chemistry" xml:lang="en"><term>Bacillus</term>
<term>Bombyx</term>
<term>Halobacterium salinarum</term>
<term>Plants</term>
</keywords>
<keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>Bacillus</term>
<term>Bacillus thermoproteolyticus neutral proteinase</term>
<term>Bactériorhodopsines</term>
<term>Bombyx</term>
<term>Halobacterium salinarum</term>
<term>Lysozyme</term>
<term>Plantes</term>
<term>Protéines</term>
<term>Protéines d'insecte</term>
<term>Protéines végétales</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Crystallization</term>
<term>Crystallography, X-Ray</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Cristallisation</term>
<term>Cristallographie aux rayons X</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Cluster Analysis</term>
<term>Models, Molecular</term>
<term>Synchrotrons</term>
<term>Workflow</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de regroupements</term>
<term>Animaux</term>
<term>Flux de travaux</term>
<term>Modèles moléculaires</term>
<term>Synchrotrons</term>
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<front><div type="abstract" xml:lang="en">Here, an automated procedure is described to identify the positions of many cryocooled crystals mounted on the same sample holder, to rapidly predict and rank their relative diffraction strengths and to collect partial X-ray diffraction data sets from as many of the crystals as desired. Subsequent hierarchical cluster analysis then allows the best combination of partial data sets, optimizing the quality of the final data set obtained. The results of applying the method developed to various systems and scenarios including the compilation of a complete data set from tiny crystals of the membrane protein bacteriorhodopsin and the collection of data sets for successful structure determination using the single-wavelength anomalous dispersion technique are also presented. </div>
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<Month>08</Month>
<Day>23</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
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<Month>Nov</Month>
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<Title>Acta crystallographica. Section D, Biological crystallography</Title>
<ISOAbbreviation>Acta Crystallogr D Biol Crystallogr</ISOAbbreviation>
</Journal>
<ArticleTitle>MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.</ArticleTitle>
<Pagination><MedlinePgn>2328-43</MedlinePgn>
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<Abstract><AbstractText>Here, an automated procedure is described to identify the positions of many cryocooled crystals mounted on the same sample holder, to rapidly predict and rank their relative diffraction strengths and to collect partial X-ray diffraction data sets from as many of the crystals as desired. Subsequent hierarchical cluster analysis then allows the best combination of partial data sets, optimizing the quality of the final data set obtained. The results of applying the method developed to various systems and scenarios including the compilation of a complete data set from tiny crystals of the membrane protein bacteriorhodopsin and the collection of data sets for successful structure determination using the single-wavelength anomalous dispersion technique are also presented. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zander</LastName>
<ForeName>Ulrich</ForeName>
<Initials>U</Initials>
<AffiliationInfo><Affiliation>Structural Biology Group, European Synchrotron Radiation Facility, CS 40220, 38043 Grenoble, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Bourenkov</LastName>
<ForeName>Gleb</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>European Molecular Biology Laboratory, Hamburg Outstation, Notkestrasse 85, 22607 Hamburg, Germany.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Popov</LastName>
<ForeName>Alexander N</ForeName>
<Initials>AN</Initials>
<AffiliationInfo><Affiliation>Structural Biology Group, European Synchrotron Radiation Facility, CS 40220, 38043 Grenoble, France.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>de Sanctis</LastName>
<ForeName>Daniele</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Structural Biology Group, European Synchrotron Radiation Facility, CS 40220, 38043 Grenoble, France.</Affiliation>
</AffiliationInfo>
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MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.

MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.

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